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XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments.

Swertz, Morris A
; 
Velde, K Joeri van der
; 
Tesson, Bruno M
; 
Scheltema, Richard A
; 
Arends, Danny
; 
Vera, Gonzalo
; 
Alberts, Rudi
; 
Dijkstra, Martijn
; 
Schofield, Paul
; 
Schughart, Klaus
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2010
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Abstract
We present an extensible software model for the genotype and phenotype community, XGAP. Readers can download a standard XGAP (http://www.xgap.org) or auto-generate a custom version using MOLGENIS with programming interfaces to R-software and web-services or user interfaces for biologists. XGAP has simple load formats for any type of genotype, epigenotype, transcript, protein, metabolite or other phenotype data. Current functionality includes tools ranging from eQTL analysis in mouse to genome-wide association studies in humans.
Citation
XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments. 2010, 11 (3):R27 Genome Biol.
Affiliation
Genomics Coordination Center, Department of Genetics, University Medical Center Groningen and University of Groningen, Groningen, The Netherlands. m.a.swertz@rug.nl
Publisher
Journal
Genome biology
URI
http://hdl.handle.net/10033/134179
DOI
10.1186/gb-2010-11-3-r27
PubMed ID
20214801
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Article
Language
en
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ISSN
1465-6914
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publications of the research group infection genetics (INFG)