Loading...
Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment.
Breider, Sven Teshima, Hazuki Petersen, Jörn Chertkov, Olga Dalingault, Hajnalka Chen, Amy Pati, Amrita Ivanova, Natalia Lapidus, Alla Goodwin, Lynne A
Breider, Sven
Teshima, Hazuki
Petersen, Jörn
Chertkov, Olga
Dalingault, Hajnalka
Chen, Amy
Pati, Amrita
Ivanova, Natalia
Lapidus, Alla
Goodwin, Lynne A
Citations
Altmetric:
Advisors
Editors
Other Contributors
Issue Date
2014-06-15
Submitted date
Files
Loading...
Open Access publication
Adobe PDF, 1.32 MB
Other Titles
Abstract
Leisingera nanhaiensis DSM 24252(T) is a Gram-negative, motile, rod-shaped marine Alphaproteobacterium, isolated from sandy marine sediments. Here we present the non-contiguous genome sequence and annotation together with a summary of the organism's phenotypic features. The 4,948,550 bp long genome with its 4,832 protein-coding and 64 RNA genes consists of one chromosome and six extrachromosomal elements with lengths of 236 kb, 92 kb, 61 kb, 58 kb, 56 kb, and 35 kb, respectively. The analysis of the genome showed that DSM 24252(T) possesses all genes necessary for dissimilatory nitrite reduction, and the strain was shown to be facultatively anaerobic, a deviation from the original description that calls for an emendation of the species. Also present in the genome are genes coding for a putative prophage, for gene-transfer agents and for the utilization of methylated amines. Phylogenetic analysis and intergenomic distances indicate that L. nanhaiensis might not belong to the genus Leisingera.
Citation
Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment. 2014, 9 (3):687-703 Stand Genomic Sci
Publisher
Journal
PubMed ID
PubMed Central ID
Additional Links
Embedded video
Type
Article
Language
en
Description
Series/Report no.
ISSN
1944-3277