XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments.
dc.contributor.author | Swertz, Morris A | |
dc.contributor.author | Velde, K Joeri van der | |
dc.contributor.author | Tesson, Bruno M | |
dc.contributor.author | Scheltema, Richard A | |
dc.contributor.author | Arends, Danny | |
dc.contributor.author | Vera, Gonzalo | |
dc.contributor.author | Alberts, Rudi | |
dc.contributor.author | Dijkstra, Martijn | |
dc.contributor.author | Schofield, Paul | |
dc.contributor.author | Schughart, Klaus | |
dc.contributor.author | Hancock, John M | |
dc.contributor.author | Smedley, Damian | |
dc.contributor.author | Wolstencroft, Katy | |
dc.contributor.author | Goble, Carole | |
dc.contributor.author | de Brock, Engbert O | |
dc.contributor.author | Jones, Andrew R | |
dc.contributor.author | Parkinson, Helen E | |
dc.contributor.author | Jansen, Ritsert C | |
dc.date.accessioned | 2011-06-22T12:36:49Z | en |
dc.date.available | 2011-06-22T12:36:49Z | en |
dc.date.issued | 2010 | en |
dc.identifier.citation | XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments. 2010, 11 (3):R27 Genome Biol. | en |
dc.identifier.issn | 1465-6914 | en |
dc.identifier.pmid | 20214801 | en |
dc.identifier.doi | 10.1186/gb-2010-11-3-r27 | en |
dc.identifier.uri | http://hdl.handle.net/10033/134179 | en |
dc.description.abstract | We present an extensible software model for the genotype and phenotype community, XGAP. Readers can download a standard XGAP (http://www.xgap.org) or auto-generate a custom version using MOLGENIS with programming interfaces to R-software and web-services or user interfaces for biologists. XGAP has simple load formats for any type of genotype, epigenotype, transcript, protein, metabolite or other phenotype data. Current functionality includes tools ranging from eQTL analysis in mouse to genome-wide association studies in humans. | |
dc.language.iso | en | en |
dc.subject.mesh | Animals | en |
dc.subject.mesh | Genetic Association Studies | en |
dc.subject.mesh | Genomics | en |
dc.subject.mesh | Humans | en |
dc.subject.mesh | Mice | en |
dc.subject.mesh | Models, Genetic | en |
dc.subject.mesh | Quantitative Trait Loci | en |
dc.subject.mesh | Software | en |
dc.title | XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments. | en |
dc.type | Article | en |
dc.contributor.department | Genomics Coordination Center, Department of Genetics, University Medical Center Groningen and University of Groningen, Groningen, The Netherlands. m.a.swertz@rug.nl | en |
dc.identifier.journal | Genome biology | en |
refterms.dateFOA | 2018-06-13T01:33:31Z | |
html.description.abstract | We present an extensible software model for the genotype and phenotype community, XGAP. Readers can download a standard XGAP (http://www.xgap.org) or auto-generate a custom version using MOLGENIS with programming interfaces to R-software and web-services or user interfaces for biologists. XGAP has simple load formats for any type of genotype, epigenotype, transcript, protein, metabolite or other phenotype data. Current functionality includes tools ranging from eQTL analysis in mouse to genome-wide association studies in humans. |