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    Co-occurrence Analysis of Microbial Taxa in the Atlantic Ocean Reveals High Connectivity in the Free-Living Bacterioplankton.

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    Authors
    Milici, Mathias
    Deng, Zhi-Luo
    Tomasch, Jürgen
    Decelle, Johan
    Wos-Oxley, Melissa L
    Wang, Hui
    Jáuregui, Ruy
    Plumeier, Iris
    Giebel, Helge-Ansgar
    Badewien, Thomas H
    Wurst, Mascha
    Pieper, Dietmar H
    Simon, Meinhard
    Wagner-Döbler, Irene
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    Issue Date
    2016
    
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    Abstract
    We determined the taxonomic composition of the bacterioplankton of the epipelagic zone of the Atlantic Ocean along a latitudinal transect (51°S-47°N) using Illumina sequencing of the V5-V6 region of the 16S rRNA gene and inferred co-occurrence networks. Bacterioplankon community composition was distinct for Longhurstian provinces and water depth. Free-living microbial communities (between 0.22 and 3 μm) were dominated by highly abundant and ubiquitous taxa with streamlined genomes (e.g., SAR11, SAR86, OM1, Prochlorococcus) and could clearly be separated from particle-associated communities which were dominated by Bacteroidetes, Planktomycetes, Verrucomicrobia, and Roseobacters. From a total of 369 different communities we then inferred co-occurrence networks for each size fraction and depth layer of the plankton between bacteria and between bacteria and phototrophic micro-eukaryotes. The inferred networks showed a reduction of edges in the deepest layer of the photic zone. Networks comprised of free-living bacteria had a larger amount of connections per OTU when compared to the particle associated communities throughout the water column. Negative correlations accounted for roughly one third of the total edges in the free-living communities at all depths, while they decreased with depth in the particle associated communities where they amounted for roughly 10% of the total in the last part of the epipelagic zone. Co-occurrence networks of bacteria with phototrophic micro-eukaryotes were not taxon-specific, and dominated by mutual exclusion (~60%). The data show a high degree of specialization to micro-environments in the water column and highlight the importance of interdependencies particularly between free-living bacteria in the upper layers of the epipelagic zone.
    Citation
    Co-occurrence Analysis of Microbial Taxa in the Atlantic Ocean Reveals High Connectivity in the Free-Living Bacterioplankton. 2016, 7:649 Front Microbiol
    Journal
    Frontiers in microbiology
    URI
    http://hdl.handle.net/10033/617336
    DOI
    10.3389/fmicb.2016.00649
    PubMed ID
    27199970
    Type
    Article
    Language
    en
    ISSN
    1664-302X
    ae974a485f413a2113503eed53cd6c53
    10.3389/fmicb.2016.00649
    Scopus Count
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    publications of the research group microbial communication (KOM)

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