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Issue Date
2019-03-04
Metadata
Show full item recordAbstract
The explosive growth in taxonomic metagenome profiling methods over the past years has created a need for systematic comparisons using relevant performance criteria. The Open-community Profiling Assessment tooL (OPAL) implements commonly used performance metrics, including those of the first challenge of the initiative for the Critical Assessment of Metagenome Interpretation (CAMI), together with convenient visualizations. In addition, we perform in-depth performance comparisons with seven profilers on datasets of CAMI and the Human Microbiome Project. OPAL is freely available at https://github.com/CAMI-challenge/OPAL .Citation
Genome Biol. 2019 Mar 4;20(1):51. doi: 10.1186/s13059-019-1646-y.Affiliation
BRICS, Braunschweiger Zentrum für Systembiologie, Rebenring 56,38106 Braunschweig, Germany.Publisher
BioMedCentralJournal
Genome BiologyPubMed ID
30832730Type
ArticleLanguage
enISSN
1474-760Xae974a485f413a2113503eed53cd6c53
10.1186/s13059-019-1646-y
Scopus Count
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- Creative Commons
Except where otherwise noted, this item's license is described as Attribution-NonCommercial-ShareAlike 4.0 International