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dc.contributor.authorMeyer, Fernando
dc.contributor.authorBremges, Andreas
dc.contributor.authorBelmann, Peter
dc.contributor.authorJanssen, Stefan
dc.contributor.authorMcHardy, Alice C
dc.contributor.authorKoslicki, David
dc.date.accessioned2019-04-30T08:51:25Z
dc.date.available2019-04-30T08:51:25Z
dc.date.issued2019-03-04
dc.identifier.citationGenome Biol. 2019 Mar 4;20(1):51. doi: 10.1186/s13059-019-1646-y.en_US
dc.identifier.issn1474-760X
dc.identifier.pmid30832730
dc.identifier.doi10.1186/s13059-019-1646-y
dc.identifier.urihttp://hdl.handle.net/10033/621759
dc.description.abstractThe explosive growth in taxonomic metagenome profiling methods over the past years has created a need for systematic comparisons using relevant performance criteria. The Open-community Profiling Assessment tooL (OPAL) implements commonly used performance metrics, including those of the first challenge of the initiative for the Critical Assessment of Metagenome Interpretation (CAMI), together with convenient visualizations. In addition, we perform in-depth performance comparisons with seven profilers on datasets of CAMI and the Human Microbiome Project. OPAL is freely available at https://github.com/CAMI-challenge/OPAL .en_US
dc.language.isoenen_US
dc.publisherBioMedCentralen_US
dc.rightsAttribution-NonCommercial-ShareAlike 4.0 International*
dc.rights.urihttp://creativecommons.org/licenses/by-nc-sa/4.0/*
dc.subjectBioboxesen_US
dc.subjectMetagenomicsen_US
dc.subjectPerformance metricsen_US
dc.subjectTaxonomic profilingen_US
dc.titleAssessing taxonomic metagenome profilers with OPAL.en_US
dc.typeArticleen_US
dc.contributor.departmentBRICS, Braunschweiger Zentrum für Systembiologie, Rebenring 56,38106 Braunschweig, Germany.en_US
dc.identifier.journalGenome Biologyen_US
refterms.dateFOA2019-04-30T08:51:25Z
dc.source.journaltitleGenome biology


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